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Management of Project Data
| • | Define custom families of proteins using a multiple sequence alignment
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| • | Families automatically maintained as new entries are added to the project
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| • | Provide a reference structure as a basis for superposition
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Pocket Similarity
| • | Search for similar binding pockets
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| • | Exhaustive 3D alpha carbon common subset search to determine pocket correspondences
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| • | Predict ligand-binding cavities and visualize in 3D
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Structural Superposition
| • | View all prealigned project data and hide/show ligands and receptors
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| • | Superpose based on ligand, receptor or pocket
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| • | Automatic determination of receptor or pocket correspondence between structures
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Web-based Search
| • | Exclusion subqueries allow for more complex searches
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| • | Search any CIF or XML field of an entry
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| • | Copy & paste molecules directly from ISIS/Draw or ChemDraw, or sequences in FASTA format
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Learn more about PSILO
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