Emad Tajkhorshid, Director of NIH Biotechnology Center for Macromolecular Modeling and Bioinformatics, Beckman Institute, University of Illinois (US)
The cellular membrane is the first cellular compartment that is encountered by any exogenous molecular species entering the body. The cellular membrane and how the molecular species interact with it determine both pharmacokinetics and pharmacodynamic properties of the molecules. Hosting a large number of functionally diverse proteins associated with this key metabolic compartment, the membrane not only directly controls the traffic of various molecules in and out of the cell, it also participates in important processes such as signal transduction and chemical processing of incoming molecular species. In this talk, I will present a number of cases where details of interaction of small molecular species such as drugs with the membrane, which are often experimentally inaccessible, have been studied using advanced molecular simulation techniques. Examples include systems where the partitioning of the drug in the membrane constitutes a key step for its final biological function, e.g., binding to and interacting with a protein associated with the membrane. I will also discuss some of the novel approaches we have developed to characterize binding of ligands to different functional intermediates of protein, which we refer to as extended ensemble docking. These examples demonstrate that membrane is not only important for the overall distribution of drugs and other small molecules into different compartments of the body, it may also play a key role in determining the efficiency and the mode of interaction of the drug with its target protein.